Papers
- Utzny, C., Faroudi, M., Valitutti, S. (2005) Frequency encoding of T-cell receptor engagement dynamics in calcium time series.. Biophys J 88:1-14
- Benedito, R. & Duarte, A. (2005) Expression of Dll4 during mouse development suggests multiple developmental roles. Gene Expression Patterns 5:750-5
- Rocha, L.M. and Hordijk, W. (2005) Material Representations: From the Genetic Code to the Evolution of Cellular Automata. Artificial Life 11(1-2):189 - 214
- Mosedale, G., Niedzwiedz, W., Alpi, A., Perrina, F., Pereira Leal, J.B., Johnson, M., Langevin, F., Pace, P., Patel, K.J. (2005) The vertebrate Hef ortholog is a component of the Fanconi anemia tumor-suppressor pathway. Nature Struct. Mol. Biol. 12(9):763-71
- Köppen, M., Heisenberg CP. (2005) Cleavage and gastrulation in zebrafish embryos. Encyclopedia Of Life Sciences [doi:10.1038/npg.els.0001072]
- Muto A*, Orger MB*, Wehman A, Smear MC, Kay JN, Page-McCaw P, Gahtan E, Xiao T, Nevin LM, Gosse NJ, Staub W, Finger-Baier K, Baier H. * equal contributions (2005) Forward genetic analysis of visual behaviors in zebrafish. PLOS Genet 1(5):e66
- Sepúlveda, N., Boucontet, L., Pereira, P., Carneiro, J. (2005) Stochastic modeling of T cell receptor γ gene rearrangement. J. Theor. Biol. 234:153-165
- Ghielmetti, M., Zwicker, M., Ghielmetti, T., Simon, M.M., Villiger, P.M. and Padovan, E. (2005) Synthetic bacterial lipopeptide analogs facilitate naive CD4+ T cell differentiation and enhance antigen-specific HLA-II restricted responses.. Eur J Immunol 35:2434-2442
- Dionisio, F. (2005) Plasmids survive despite their cost and male-specific-phages due to heterogeneity of bacterial populations. Evolutionary Ecology Research 7:1089-1107
- El-Sayed, N.M., Myler, P.J., Blandin, G., Berriman, M., Crabtree, J., Aggarwal, G., Caler, E., Renauld, H., Worthey, E.A., Hertz-Fowler, C., Ghedin, E., Peacock, C., Bartholomeu, D.C., Haas, B.J., Tran, A.N., Wortman, J.R. Alsmark, U.C., Angiuoli, S., Anupama, A., Badger, J., Bringaud, F., Cadag, E., Carlton, J.M., Cerqueira, G.C., Creasy, T., Delcher, A.L., Djikeng, A., Embley, T.M., Hauser, C., Ivens, A.C., Kummerfeld, S.K., Pereira Leal, J.B., Nilsson, D., Peterson, J., Salzberg, S.L., Shallom, J., Silva, J.C., Sundaram, J., Westenberger, S., White, O., Melville, S.E., Donelson, J.E., Andersson, B., Stuart, K.D., Hall, N. (2005) Comparative genomics of trypanosomatid parasitic protozoa. Science 309(573:404-9
- Orger MB & Baier H. (2005) Channeling of red and green cone inputs to the zebrafish optomotor response. Visual Neuroscience 22(3):275-81
- Shen, S., Ding, Y., Tadokoro, C. E., Olivares-Villagomez, D., Camps-Ramirez, M., Curotto de Lafaille, M. A., and Lafaille, J. J. (2005) Control of homeostatic proliferation by regulatory T cells. J. Clin. Invest. 115:3517-3526
- Barreto, V.M., Pan-Hammarstrom, Q., Zhao, Y., Hammarstrom, L., Misulovin, Z., Nussenzweig, M.C. (2005) AID from bony fish catalyzes class switch recombination. The Journal of Experimental Medicine 202(6):733–738
- Dionisio, F., Conceição, I.C., Marques A.C.R., Fernandes, L. and Gordo, I. (2005) The evolution of a conjugative plasmid and its ability to increase bacterial fitness. Biol. Lett. 1:250-252
- Pereira Leal, J.B. and Teichmann, S.A. (2005) Novel specificities emerge by step-wize duplication of functional modules. Genome Res. 15(4):552-9
- Martin, A. P., de Moraes, L. V., Tadokoro, C. E., Commodaro, A. G., Urrets-Zavalia, E., Rabinovich, G. A., Urrets-Zavalia, J., Rizzo, L. V., and Serra, H. M. (2005) Administration of a peptide inhibitor of alpha4-integrin inhibits the development of experimental autoimmune uveitis. Invest. Ophthalmol. Vis. Sci. 46:2056-2063
- Costa, R.M., Drew, C. and Silva, A.J. (2005) Notch to Remember. Trends in Neurosciences 28:429-35
- Oliveira, M. A., Tadokoro, C. E., Lima, G. M., Mosca, T., Vieira, L. Q., Leenen, P. J., and Abrahamsohn, I. A. (2005) Macrophages at intermediate stage of maturation produce high levels of IL-12 p40 upon stimulation with Leishmania. Microbes Infect. 7:213-223
- Kimura-Yoshida, C., Nakano, H., Okamura, D., Nakao, K., Yonemura, S., Belo, J.A., Aizawa, S., Matsui, Y. and Matsuo, I. (2005) Canonical Wnt signaling and its antagonist regulate anterior-posterior axis polarization by guiding cell migration in mouse visceral endoderm.. Dev. Cell 9:639-650
- Echevarria, D., Martínez, S., Marques, S., Lucas-Teixeira, V. and Belo, J.A. (2005) Mkp3 is a negative feedback modulator of Fgf8 signaling in the mammalian isthmic organizer.. Dev. Biology 277(1):114-128