Papers
- Teles, M.C., Almeida, O., Lopes, J.S., Oliveira, R.F. (2015) Social interactions elicit rapid shifts in functional connectivity in the social decision-making network of zebrafish.. Proc R Soc B 282:20151099
- Raposo, A.A.S.F., Vasconcelos, F.F., Drechsel, D., Marie, C., Johnston, C., Dolle, D., Bithell, A., Guillotin, S., van den Berg, D.L.C., Etwiller, L., Flicek, P., Crawford, G.E., Parras, C.M, Berninger, B., Buckley, N.J., Guillemot, F., Castro, D.S. (2015) Ascl1 coordinately regulates gene expression and the chromatin landscape during neurogenesis. Cell Rep pii:S2211-1247(15)00171-0
- Herboso L, Oliveira MM, Talamillo A, Pérez C, González M, Martín D, Sutherland JD, Shingleton AW, Mirth CK, & Barrio R (2015) Ecdysone promotes growth of imaginal discs through the regulation of Thor in D. melanogaster. Scientific Reports 5:12383
- Tanaka, K., Diekmann, Y., Hazbun, A., Hijazi, A., Vreede, B., Roch, F., Sucena, É. (2015) Multi-species analysis of expression pattern diversification in the recently expanded insect Ly6 gene family. Molecular Biology and Evolution 32(7):1730-1747
- Naldi, A., Monteiro, P.T., Müssel, C., the Consortium for Logical Models and Tools, Kestler, H.A., Thieffry, D., Xenarios, I., Saez-Rodriguez, J., Helikar, T., Chaouiya, C. (2015) Cooperative development of logical modelling standards and tools with CoLoMoTo.. Bioinformatics. 31 (7):1154-9
- Sano, T., Huang, W., Hall, J.A., Yang, Y., Chen, A., Gavzy, S.J., Lee, J., Ziel, J.W., Miraldi, E.R., Domingos, A.I., Bonneau, R., Littman, D.R. (2015) An IL-23R/IL-22 circuit regulates epithelial serum amyloid a to promote local effector Th17 responses.. Cell. 163:381-393
- Gaspar, P., Holder, M., Russell, M., Collinson, L., Janody, F., Tapon, N. (2015) Zyxin antagonizes the FERM protein Expanded to couple F-actin and Yorkie-dependent organ growth.. Curr Biol. 25(6):679-89
- Abril-de-Abreu, R., Cruz, J., Oliveira, R.F. (2015) Social eavesdropping in zebrafish: tuning of attention to social interactions.. Sci Rep. 5:12678
- T. Simas and L.M. Rocha (2015) Distance Closures on Complex Networks. doi:10.1017/nws.2015.11. Network Science 3(2):227-268
- Rodrigues MA, Martins NE, Balancé LF, Broom LN, Dias AJS, Fernandes ASD, Rodrigues F, Sucena É, & Mirth CK (2015) Drosophila melanogaster larvae make foraging choices to minimize developmental time. Journal of Insect Physiology 81:69-80
- Barroso-Batista, J., Demengeot, J., Gordo, I. (2015) Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria. Nat Commun. 6:8945
- Remy, E., Rebouissou, S., Chaouiya, C., Zinovyev, A., Radvanyi, F., Calzone, L. (2015) A modelling approach to explain mutually exclusive and co-occurring genetic alterations in bladder tumorigenesis.. Cancer Res. 75(19):4042-52
- Mateo, J.L., van den Berg, D.L., Haeussler, M., Drechsel, D., Gaber, Z.B., Castro, D.S. , Robson, P., Crawford, G.E., Flicek, P., Ettwiller, L., Wittbrodt, J., Guillemot, F., Martynoga, B. (2015) Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal. Genome Res 25(1):41-56
- Alenquer M., Amorim, M.J. (2015) Exosome biogenesis, regulation, and function in viral infection.. Viruses 7(9):5066-5083
- Huang, W., Thomas, B., Flynn, R.A., Gavzy, S.J., Wu, L., Kim, S.V., Hall, J.A., Miraldi, E.R., Ng, C.P., Rigo, F.W., Meadows, S., Montoya, N.R., Herrera, N.G., Domingos, A.I., Rastinejad, F., Myers, R.M., Fuller-Pace, F.V., Bonneau, R., Chang, H.Y., Acuto, O., Littman, D.R. (2015) DDX5 and its associated lncRNA RMRP modulate Th17 cell effector functions.. Nature. 528:517-522
- Carvalho MJA* & Mirth CK* (2015) Coordinating morphology with behaviour during development: an integrative approach from a fly perspective. Frontiers in Ecology and Evolution 3:5
- Simões, J.M., Barata, E.N., Harris, R.M., O’Connell, L.A., Hofmann, H.A., Oliveira, R.F. (2015) Social odors conveying dominance and reproductive information induce rapid physiological and neuromolecular changes in a cichlid fish.. BMC Genomics 16:114
- A. Kolchinsky, A. Gates and L.M. Rocha (2015) Modularity and the spread of perturbations in complex dynamical systems. Phys. Rev. E Rapid Communications 92:060801(R)
- Mair, A., Pedrotti, L., Wurzinger, B., Anrather, D., Simeunovic, A., Weiste, C., Valerio, C., Dietrich, K., Kirchler, T., Nägele, T., Vicente Carbajosa, J., Hanson, J., Baena-Gonzalez, E., Chaban, C., Weckwerth, W., Dröge-Laser, W., Teige, M. (2015) SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.. eLife. 4:e05828
- Rode, I., Martins, V.C., Küblbeck, G., Maltry, N., Tessmer, C., Rodewald, H.R. (2015) Foxn1 protein expression in the developing, aging, and regenerating thymus.. J Immunol. 195(12):5678-87